SBML Showcase

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Padraig Gleeson, 30 Apr 2014 14:57


Introduction

Most of the interactions between SBML and LEMS/NeuroML showcased here are enabled by:

Note these features can be accessed easily with the jNeuroML tool. For example:

  • Load LEMSFile.xml using jLEMS, and convert it to SBML format:
   jnml LEMSFile.xml -sbml
  • Load SBMLFile.sbml using jSBML, and convert it to LEMS format using values for duration & dt in ms
    jnml -sbml-import SBMLFile.sbml duration dt

Note that these features are still in active development!