SBML Showcase

Converting NeuroML2/LEMS to & from SBML

Most of the interactions between SBML and LEMS/NeuroML showcased here are enabled by:

Note these features can be accessed easily with the jNeuroML tool. For example:

  • Load LEMSFile.xml using jLEMS, and convert it to SBML format:

     jnml LEMSFile.xml -sbml
    
  • Load LEMSFile.xml using jLEMS, and convert it to SBML format with a SED-ML specification for the experiment:

     jnml LEMSFile.xml -sbml-sedml
    
  • Load SBMLFile.sbml using jSBML, and convert it to LEMS format using values for duration & dt in ms

    jnml -sbml-import SBMLFile.sbml duration dt
    

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